Error updating SystemD

CalebCDE

Hi, i have this error while update systemd.

Run Task: Syncing filesystems success
Run Task: Updating dynamic library cache success
Run Task: Updating systemd tmpfiles failed

A copy of the command output follows:

/usr/lib64/tmpfiles.d/NetworkManager.conf:2: Line references path below legacy directory /var/run/, updating /var/run/NetworkManager → /run/NetworkManager; please update the tmpfiles.d/ drop-in file accordingly.
/usr/lib64/tmpfiles.d/NetworkManager.conf:3: Line references path below legacy directory /var/run/, updating /var/run/NetworkManager/devices → /run/NetworkManager/devices; please update the tmpfiles.d/ drop-in file accordingly.
/usr/lib64/tmpfiles.d/spice-vdagent.conf:1: Line references path below legacy directory /var/run/, updating /var/run/spice-vdagentd → /run/spice-vdagentd; please update the tmpfiles.d/ drop-in file accordingly.
/usr/lib64/tmpfiles.d/spice-vdagentd.conf:2: Duplicate line for path "/run/spice-vdagentd", ignoring.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/NetworkManager.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /etc (owned by root) during canonicalization of /etc/audit.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/colord.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/cups.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/spool/cups.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache/cups.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/flatpak/exports.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/flatpak/exports/share.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/flatpak/exports/share.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/lock.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/libvirt.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/libvirt.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/libvirt.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/libvirt/qemu.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/lock.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/db/comar3.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/db/comar3/scripts.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/db/comar3/scripts/System.Manager.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /etc (owned by root) during canonicalization of /etc/polkit-1.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/db/pgsql.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/samba.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/samba.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/lock.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/apparmor.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/apparmor.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/dbus-1.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/dbus-1.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/desktop.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/seccomp.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd/snap.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/snapd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/lock.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/sudo.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/systemd.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib/systemd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/cache.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/wsdd.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/lib.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal/7316a0e8b0f5421b87e84f82bfea7483.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal/7316a0e8b0f5421b87e84f82bfea7483.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal/7316a0e8b0f5421b87e84f82bfea7483.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev/snd/timer.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev/loop-control.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev/fuse.
Detected unsafe path transition / (owned by caleb) → /dev (owned by root) during canonicalization of /dev/kvm.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/log/journal.
Detected unsafe path transition / (owned by caleb) → /run (owned by root) during canonicalization of /run/log/journal.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal/7316a0e8b0f5421b87e84f82bfea7483/system.journal.
Detected unsafe path transition / (owned by caleb) → /var (owned by root) during canonicalization of /var/log/journal/7316a0e8b0f5421b87e84f82bfea7483/system.journal.

Run Task: Updating mimetype database success
Run Task: Updating icon theme cache: hicolor success
Run Task: Updating desktop database success
Run Task: Updating manpages database success

But the folders looks like have root permisions when i check in Nautilus... any idea?

Staudey

What's the output of ls -ld /

CalebCDE

Staudey

Hi, this:

drwxr-xr-x 22 caleb wheel 4096 jul 25 22:33 /

joebonrichie

Should look like this:
drwxr-xr-x 22 root root 288 Jul 6 10:58 /

You'll want everything owned by root apart from /home/$USER (caleb) AFAIK.

You'll probably to do something like (please don't execute these directly understand what they are doing first)
chown root:root -R /
chown $USER:$USER -R /home/$USER

CalebCDE

Thanks all, im trying reinstall all packages as ReillyBrogan said... before reinstall all... i don't wish reinstall really...

joebonrichie i understood that, but i see the same problems as @ReillyBrogan said, maybe in a near future i will have strange problems with permissions....

EDIT: I don't wish reinstall because im using solus since 2017 (This installation since 2019) then... so hard for me, lot of packages, lot of documents, lot of things for backup... this is my day-to-day pc/operating system, for work and for fun.... :-(
Thanks both!

ReillyBrogan

I don't think that will be sufficient, there are a bunch of directories that are supposed to be owned by users/groups other than root that are not directories under home.

@CalebCDE Honestly you should re-install your system. It's going to be the fastest and most reliable way to get back to having your directory permissions the way they should be. If you try any other method to try to fix them you are likely to miss some permissions somewhere and in six months/a year/whatever you'll likely have weird bugs that you can't find anything about on the internet. Backup your data, copy it to an external drive, re-install, and don't ever run a recursive chown on your root (/) again.

However, if you want to roll the dice on your existing system (seriously, don't do this, just re-install), the following command will probably fix the majority of the permissions for you:
eopkg li | awk '{print $1}' | xargs sudo eopkg it --reinstall
This will reinstall every package currently installed on your system and will probably take a while to complete. Plenty of time to reconsider why you've chosen this path when you should have just re-installed.

xahodo

CalebCDE reinstall man, there's no shame in reinstalling and uptime doesn't give you any additional brownie points.

Reinstalling will save you from killing yourself when your installation finally explodes on you. Murphy's law implies that your installation will probably die the moment you least expect it and the pain will be worst.

An external USB drive of 4TB can be gotten on Amazon for $100

Make sure it's formatted ext4. Put /home/<username> on there (make sure privileges are ok).
Make a text file (no, not libreoffice) of all the software you have installed (including flatpaks, snaps, and appimages).

Make an install USB of Solus (again, on amazon you can get an USB stick of 16GB for $8.50).

You'll have spent about $108 to get your shiny fresh install up and running (this figure assumes you need to buy those two USB drives).

ReillyBrogan

OK, if you don't want to re-install your system at the very least you should prepare an installer USB and have some idea of what you are going to do if your system one day decides not to boot anymore (those weird bugs I mentioned could very well extend to having your system be rendered unbootable after an update - remember that nobody who works on packages tests with a system that has messed up permissions so if an update would break such a system it won't be caught in testing). Please understand that if that happens Solus devs won't be responsible for your system, you are the one choosing to disregard our warning here and move forward with an unsupported configuration.

Like I said, it'll be a lot easier to copy your data off now, back up your configs, etc now that you still have a working system rather than later when you have to mount the system from a live USB and are trying to figure out how to fix what's broken or figure out all the relevant data to be copied out from it.