I know this isn't helpful with your current situtation, but is advise that might help in the future.
Get a system with a metric ton of connectors (USB). I have like 8 on my back plane, and 4 in front. I think two on each are USB 3 and the rest are USB 2.
I've actually never had a USB connector that works in one OS and not in another, so I don't really have any other suggestions, but at least if you have a lot, chances are some will work (lol).