Temporary blocking of updates, now unblocked

Bbrent · May 13, 2024

budgie, 32 updates, reboot--

gedit: still broken (light)--not sure it was this sync anyway

sudo eopkg check: all good except 
Checking integrity of tar                                            Broken
Corrupted file: /bin/tar
Checking integrity of systemd                                        Broken
Corrupted file: /bin/systemctl
Corrupted file: /sbin/halt
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Checking integrity of ntfs-3g                                        Broken
Corrupted file: /bin/lowntfs-3g
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Corrupted file: /sbin/ntfsclone
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Corrupted file: /sbin/ntfsundelete
Checking integrity of bash                                           Broken
Corrupted file: /bin/bash
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Checking integrity of iproute2                                       Broken
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Checking integrity of util-linux                                     Broken
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Corrupted file: /bin/ionice
Corrupted file: /bin/ipcmk
Corrupted file: /bin/ipcrm
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Corrupted file: /bin/irqtop
CoCorrupted file: /bin/kill
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rrupted file: /bin/isosize
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Corrupted file: /bin/mountpoint
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Corrupted file: /bin/setarch
Corrupted file: /bin/setpgid
Corrupted file: /bin/setpriv
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Corrupted file: /bin/uclampset
Corrupted file: /bin/ul
Corrupted file: /bin/umount
Corrupted file: /bin/uname26
Corrupted file: /bin/unshare
Corrupted file: /bin/utmpdump
Corrupted file: /bin/uuidgen
Corrupted file: /bin/uuidparse
Corrupted file: /bin/vigr
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Corrupted file: /bin/waitpid
Corrupted file: /bin/wall
Corrupted file: /bin/wdctl
Corrupted file: /bin/whereis
Corrupted file: /bin/write
Corrupted file: /bin/x86_64
Corrupted file: /sbin/addpart
Corrupted file: /sbin/agetty
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Corrupted file: /sbin/blkid
Corrupted file: /sbin/blkpr
Corrupted file: /sbin/blkzone
Corrupted file: /sbin/blockdev
Corrupted file: /sbin/cfdisk
Corrupted file: /sbin/chcpu
Corrupted file: /sbin/ctrlaltdel
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Corrupted file: /sbin/findfs
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Corrupted file: /sbin/losetup
Corrupted file: /sbin/mkfs
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Corrupted file: /sbin/mkfs.cramfs
Corrupted file: /sbin/mkfs.minix
Corrupted file: /sbin/mkswap
Corrupted file: /sbin/nologin
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Corrupted file: /sbin/readprofile
Corrupted file: /sbin/resizepart
Corrupted file: /sbin/rfkill
Corrupted file: /sbin/rtcwake
Corrupted file: /sbin/runuser
Corrupted file: /sbin/sfdisk
Corrupted file: /sbin/sulogin
Corrupted file: /sbin/swaplabel
Corrupted file: /sbin/swapoff
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Corrupted file: /sbin/switch_root
Corrupted file: /sbin/tunelp
Corrupted file: /sbin/uuidd
Corrupted file: /sbin/wipefs
Corrupted file: /sbin/zramctl
Checking integrity of sed                                            Broken
Corrupted file: /bin/sed
Checking integrity of mdadm                                          Broken
Corrupted file: /sbin/mdadm
Corrupted file: /sbin/mdmon
Checking integrity of kmod                                           Broken
Corrupted file: /bin/kmod
Corrupted file: /sbin/depmod
Corrupted file: /sbin/insmod
Corrupted file: /sbin/lsmod
Corrupted file: /sbin/modinfo
Corrupted file: /sbin/modprobe
Corrupted file: /sbin/rmmod
Checking integrity of iptables                                       Broken
Corrupted file: /bin/iptables-xml
Corrupted file: /sbin/arptables
Corrupted file: /sbin/arptables-nft
Corrupted file: /sbin/arptables-nft-restore
Corrupted file: /sbin/arptables-nft-save
Corrupted file: /sbin/arptables-restore
Corrupted file: /sbin/arptables-save
Corrupted file: /sbin/ebtables
Corrupted file: /sbin/ebtables-nft
Corrupted file: /sbin/ebtables-nft-restore
Corrupted file: /sbin/ebtables-nft-save
Corrupted file: /sbin/ebtables-restore
Corrupted file: /sbin/ebtables-save
Corrupted file: /sbin/ebtables-translate
Corrupted file: /sbin/ip6tables
Corrupted file: /sbin/ip6tables-apply
Corrupted file: /sbin/ip6tables-legacy
Corrupted file: /sbin/ip6tables-legacy-restore
Corrupted file: /sbin/ip6tables-legacy-save
Corrupted file: /sbin/ip6tables-nft
Corrupted file: /sbin/ip6tables-nft-restore
Corrupted file: /sbin/ip6tables-nft-save
Corrupted file: /sbin/ip6tables-restore
Corrupted file: /sbin/ip6tables-restore-translate
Corrupted file: /sbin/ip6tables-save
Corrupted file: /sbin/ip6tables-translate
Corrupted file: /sbin/iptables
Corrupted file: /sbin/iptables-apply
Corrupted file: /sbin/iptables-legacy
Corrupted file: /sbin/iptables-legacy-restore
Corrupted file: /sbin/iptables-legacy-save
Corrupted file: /sbin/iptables-nft
Corrupted file: /sbin/iptables-nft-restore
Corrupted file: /sbin/iptables-nft-save
Corrupted file: /sbin/iptables-restore
Corrupted file: /sbin/iptables-restore-translate
Corrupted file: /sbin/iptables-save
Corrupted file: /sbin/iptables-translate
Corrupted file: /sbin/nfnl_osf
Corrupted file: /sbin/xtables-legacy-multi
Corrupted file: /sbin/xtables-monitor
Corrupted file: /sbin/xtables-nft-multi
Checking integrity of fuse2                                          Broken
Corrupted file: /sbin/mount.fuse
Checking integrity of nodejs                                         Broken
Missing file: /usr/lib/node_modules/npm/.npmrc
Missing file: /usr/lib/node_modules/npm/lib/base-command.js
Missing file: /usr/lib/node_modules/npm/lib/cli-entry.js
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Checking integrity of coreutils                                      Broken
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Checking integrity of glibc                                          Broken
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Checking integrity of wpa_supplicant                                 Broken
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Checking integrity of armagetronad                                   OK
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also: windows barely move, runs like poop.
please advise

Moderator Edit: Don't paste wall of texts without wrapping them in triple backticks ("`") please.

AAxios · May 13, 2024

brent I think they said some that normal not sure why it would be running slow
tho.
I am going to extreme later and do a disk image before I take the leap in no hurry.

Bbrent · May 13, 2024

Axios Don't blame you. If they said 20 broken packages was normal I missed it
trying the old
sudo eopkg check | grep Broken | awk '{print $4}' | xargs sudo eopkg it --reinstall
then the old
sudo usysconf run -f
and will reboot and check again. thanks for responding.

Zzmaint · May 13, 2024

Axios I'm going to hold off personally on the rest of my devices until this is completely sorted out. My laptop was one that got hit with the initial problem, it's working now, but I can't risk being down for work (or games!).

ReillyBrogan · May 13, 2024

brent The packages are not broken, the package check itself is not handling them correctly. This was mentioned above as eopkg check showing errors, and is expected.

Basically eopkg sucks as a package manager (which is why we're replacing it) and due to it's constraints we found that satisfying all of the following was impossible:

Allowing people who didn't upgrade to the Friday sync to update and have working systems
Allowing people who did upgrade to the Friday sync to update and have working systems
Having a "clean" eopkg check that succeeds for all packages.

Given these constraints we chose the solution that satisfied the first two requirements. That means that eopkg check will show that certain packages (between 20 and 30 depending on what you have installed) are "broken" which is just because it can't handle how the symlinks on the system are setup, not because those packages are actually broken.

ReillyBrogan · May 13, 2024

Also, I edited your post but please don't paste walls of text without enclosing them in triple backticks please. See here for how.

Bbrent · May 13, 2024

ReillyBrogan That means that eopkg check will show that certain packages (between 20 and 30 depending on what you have installed) are "broken" which is just because it can't handle how the symlinks on the system are setup, not because those packages are actually broken.

that's exactly what is going on. forgive me if I missed the fine print, apparently I did. A third check shows all the same stuff "broken".
what threw me:
1) when the eopkg check | grep Broken | awk '{print $4}' | xargs sudo eopkg it --reinstall command just showed complete success and nothing broken
2) when sudo eopkg check shows 20 packages broken

these 2 contradictions exist in the output but if it's all good I'll go about my business. appreciate the clarity. I am calm

[deleted] · May 13, 2024

everything just works ️

Staudey · May 13, 2024

brent command just showed complete success and nothing broken

eopkg check without sudo can't access some directories and might show the package status as "Invalid".
Example:

Checking integrity of shim-signed                                      Unknown
Access denied: /usr/lib64/shim/BOOTX64.CSV
Access denied: /usr/lib64/shim/fbx64.efi
Access denied: /usr/lib64/shim/mmx64.efi
Access denied: /usr/lib64/shim/shimx64.efi

Also depends on what you mean by "complete success". That command will reinstall all packages that are detected as broken. Success in that case just means that everything has been reinstalled, it doesn't mean there are necessarily no more broken packages in situations such as this, when the check isn't adequate.
Anyway, if that command does any sort of package installation then it has detected broken packages indeed. In fact it will only fail if there are NO broken packages (using xargs -r fixes that, which is also reflected in the Help Center documentation now)

Bbrent · May 13, 2024

Staudey when I sudo eopkg check | grep Broken | awk '{print $4}' | xargs sudo eopkg it --reinstall this morning the result was:

Installing 24 / 24
iproute2-6.8.0-24-1-x86_64.eopkg [cached]
Installing iproute2, version 6.8.0, release 24
Extracting the files of iproute2
Installed iproute2
 [✓] Syncing filesystems                                                success
 [✓] Updating dynamic library cache                                     success
 [✓] Updating clr-boot-manager                                          success
 [✓] Updating hwdb                                                      success
 [✓] Updating system users                                              success
 [✓] Updating systemd tmpfiles                                          success
 [✓] Reloading systemd configuration                                    success
 [✓] Re-starting vendor-enabled .socket units                           success
 [✓] Compiling and Reloading AppArmor profiles                          success
 [✓] Updating mimetype database                                         success
 [✓] Updating manpages database                                         success
 [✓] Reloading udev rules                                               success
 [✓] Applying udev rules                                                success

that why I used the 'success' word but you are right there is a lot unconsidered by me after reading you.

Staudey Success in that case just means that everything has been reinstalled, it doesn't mean there are necessarily no more broken packages in situations such as this, when the check isn't adequate.

but that command implicitly looks for broken (..grep Broken..) so I assumed repair would be a consequence of the command.

Staudey In fact it will only fail if there are NO broken packages (using xargs -r fixes that, which is also reflected in the Help Center documentation now)

now that says it all. gotcha. thanks for deciphering my inability to decipher!

Zzmaint · May 14, 2024

Are we now good to go with updating as normal (with just the temporary caveat that eopkg check isn't working 100%)?

Harvey · May 14, 2024

zmaint

If we did not believe so, we would have disabled access to the repository again.

Harvey · May 14, 2024

Terry1031 The new update bricks itself at the point of trying to install baselayout package, it doesn't end up finding sbin (not 100% sure anymore, might've been bin) from that point on it doesn't continue the update and I can't open up any programs like FireFox or the Terminal.

Tried it on a complete fresh install and it still happens,

The latest update to baselayout should improve this situation.

Updating from a fresh 4.5 ISO install or potentially from an install that has not been updated in several weeks may still fail. But you should be able to just update again sudo eopkg up -y and have it complete successfully (Reboot once it is completed). At least that was the case for me on a fresh 4.5 install.

I recommend anyone seeing an error similar to this:

Installing 47 / 699
baselayout-1.9.0-81-1-x86_64.eopkg [cached]
Installing baselayout, version 1.9.0, release 81
Upgrading to new distribution release
Extracting the files of baselayout
System error. Program terminated.
[Errno 2] No such file or directory: 'bin'
Please use 'eopkg help' for general help.
Use --debug to see a traceback.

To not reboot and simply try updating again.

Unfortunately it may be impossible to support updating from every possible system state without some clunkiness like this.

Apologies for the inconvenience.

Kuuchuu · May 14, 2024

Harvey I can confirm rerunning the update fixed this issue for me on a laptop that hadn't been updated in a while, thanks!

Ssnowee · May 14, 2024

Harvey
for those who have sync'ed to Week 18 but not to Week 19, should they install baselayout first, prior to sync'ing to Week 19?

Harvey · May 14, 2024

snowee
You shouldn't need to, worst case scenario you have to run sudo eopkg up -y twice.

Zzmaint · May 14, 2024

Harvey Thank you sir. I appreciate all the work you guys have done on this!

DDirtyAngel · May 14, 2024

Here I had no attempt with update on last Friday.
I made update yesterday evening and it went smooth.
Here is Solus Gnome with Gnome 46.1
Thank you !!
(Last update was one week ago.)

MikeK61 · May 14, 2024

Hi there.
After my heart surgery i was on rehab for 3 weeks.
So no updates for about 4 weeks are installed.
Is it safe to update now or should i wait a few more days ?

PPC-TECH · May 14, 2024

Would this show up as a problem with extracting base-layout? After a clean install and attempting to update..it hangs at that point. while installing updates. Initial install and reboot is fine.. (Budgie DE) After a restart it crashes.